Summary

Target folder: /Users/yuri/Library/CloudStorage/OneDrive-MacquarieUniversity/ASFB 2022 - RSP workshop/data/Coastal

Timestamp: 2022-10-25 15:06:33

Number of target tags: 5

Number of listed receivers: 47 (of which 0 had no detections)

Data time range: 2019-01-29 23:43:44 to 2022-06-08 17:41:43 (Australia/Sydney).

Percentage of post-release valid detections: 100%

Found a bug? Report it here.

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Study area

Release sites are marked with “R.S.”. Arrays connected with an arrow indicate that the tags can only pass in one direction.

Receiver stations

Station.name Latitude Longitude Array Section Standard.name
AIMS Special Management 1 -19.28 147.06 IMOS_Coastal_Array_Queensland IMOS_Coastal_Array_Queensland St.1
Barney Point Wharf (GPC) (Gladstone) -23.84 151.27 IMOS_Coastal_Array_Queensland IMOS_Coastal_Array_Queensland St.2
Bucasia SCP -21.03 149.18 IMOS_Coastal_Array_Queensland IMOS_Coastal_Array_Queensland St.3
Bundaberg SCP -24.82 152.47 IMOS_Coastal_Array_Queensland IMOS_Coastal_Array_Queensland St.4
Cape Hilsborough -20.93 149.06 Qld_Array_-_Mackay Qld_Array_-_Mackay St.5
Cherubs Cave 2017 -27.13 153.48 Moreton_Island_-_Grey_Nurse_Shark_Installation Moreton_Island_-_Grey_Nurse_Shark_Installation St.6
CHS 1 -30.21 153.17 IMOS-ATF_Coffs_Harbour_line IMOS-ATF_Coffs_Harbour_line St.7
CHS 10 -30.21 153.25 IMOS-ATF_Coffs_Harbour_line IMOS-ATF_Coffs_Harbour_line St.8
CHS 2 -30.21 153.18 IMOS-ATF_Coffs_Harbour_line IMOS-ATF_Coffs_Harbour_line St.9
CHS 3 -30.21 153.19 IMOS-ATF_Coffs_Harbour_line IMOS-ATF_Coffs_Harbour_line St.10
CHS 4 -30.21 153.20 IMOS-ATF_Coffs_Harbour_line IMOS-ATF_Coffs_Harbour_line St.11
CHS 5 -30.21 153.21 IMOS-ATF_Coffs_Harbour_line IMOS-ATF_Coffs_Harbour_line St.12
CHS 7 -30.21 153.22 IMOS-ATF_Coffs_Harbour_line IMOS-ATF_Coffs_Harbour_line St.13
CHS 8 -30.21 153.23 IMOS-ATF_Coffs_Harbour_line IMOS-ATF_Coffs_Harbour_line St.14
CHS 9 -30.21 153.24 IMOS-ATF_Coffs_Harbour_line IMOS-ATF_Coffs_Harbour_line St.15
CL1 -29.39 153.33 Clarence_Array Clarence_Array St.16
CL2 -29.40 153.32 Clarence_Array Clarence_Array St.17
CL4 -29.38 153.30 Clarence_Array Clarence_Array St.18
CL6 -34.37 150.93 Clarence_Array Clarence_Array St.19
CLA1 -29.42 153.36 Clarence_Array Clarence_Array St.20
CLA2 -29.43 153.35 Clarence_Array Clarence_Array St.21
Coolangatta SCP -28.15 153.53 IMOS_Coastal_Array_Queensland IMOS_Coastal_Array_Queensland St.22
FAD 1 (Fraser Island) -24.81 153.10 IMOS_AIMS_QDAF_FADs IMOS_AIMS_QDAF_FADs St.23
HER 24 -23.44 151.98 IMOS-ATF_Heron_Island IMOS-ATF_Heron_Island St.24
Kalang 1 -30.48 153.03 Kalang-Bellinger_Array Kalang-Bellinger_Array St.25
Kalang 2 -30.48 153.02 Kalang-Bellinger_Array Kalang-Bellinger_Array St.26
Kalang 3 -30.49 153.03 Kalang-Bellinger_Array Kalang-Bellinger_Array St.27
Kalang 4 -30.49 153.01 Kalang-Bellinger_Array Kalang-Bellinger_Array St.28
OT 3 -23.48 152.08 IMOS-ATF_One_Tree_Island IMOS-ATF_One_Tree_Island St.29
PA_Turtle Cave M1 -27.39 153.55 Flat_Rock_-_Grey_Nurse_Shark_Installation Flat_Rock_-_Grey_Nurse_Shark_Installation St.30
Palm Beach SCP -28.10 153.49 IMOS_Coastal_Array_Queensland IMOS_Coastal_Array_Queensland St.31
Peel Island -27.47 153.35 IMOS_Coastal_Array_Queensland IMOS_Coastal_Array_Queensland St.32
Repulse Bay -20.51 148.82 Whitsundays Whitsundays St.33
Round Rock -25.93 153.19 Wolf_Rock_-_Grey_Nurse_Shark_Installation Wolf_Rock_-_Grey_Nurse_Shark_Installation St.34
Scott_s Point -27.28 153.11 IMOS_Coastal_Array_Queensland IMOS_Coastal_Array_Queensland St.35
Shute Harbour -20.31 148.80 Whitsundays Whitsundays St.36
SI 6 -27.42 153.58 IMOS-ATF_Stradbroke_Island_Line IMOS-ATF_Stradbroke_Island_Line St.37
South Trees (Gladstone) -23.85 151.32 IMOS_Coastal_Array_Queensland IMOS_Coastal_Array_Queensland St.38
SRL1 -32.45 152.55 IMOS-ATF_Seal_Rocks_Line IMOS-ATF_Seal_Rocks_Line St.39
ST09 WR -25.91 153.20 Wolf_Rock_-_Grey_Nurse_Shark_Installation Wolf_Rock_-_Grey_Nurse_Shark_Installation St.40
ST11 Shark Ally M3 -27.39 153.55 Flat_Rock_-_Grey_Nurse_Shark_Installation Flat_Rock_-_Grey_Nurse_Shark_Installation St.41
Tipplers Passage -27.82 153.41 SEQ_Array SEQ_Array St.42
WR ML -25.91 153.20 Wolf_Rock_-_Grey_Nurse_Shark_Installation Wolf_Rock_-_Grey_Nurse_Shark_Installation St.43

Deployments

Receiver Array Station.name Standard.name Start Stop
103319.dpl.1 Wolf_Rock_-_Grey_Nurse_Shark_Installation ST09 WR St.40 2019-01-28 12:43:44 2019-01-30 12:43:44
103319.dpl.2 Flat_Rock_-_Grey_Nurse_Shark_Installation PA_Turtle Cave M1 St.30 2021-05-16 22:48:10 2021-05-18 22:48:10
103327 Wolf_Rock_-_Grey_Nurse_Shark_Installation Round Rock St.34 2021-05-25 14:47:15 2021-07-21 14:47:15
103331 Wolf_Rock_-_Grey_Nurse_Shark_Installation WR ML St.43 2021-01-25 03:02:53 2021-01-27 03:02:53
103385 Flat_Rock_-_Grey_Nurse_Shark_Installation ST11 Shark Ally M3 St.41 2020-05-14 16:06:18 2020-05-16 16:06:18
103644 SEQ_Array Tipplers Passage St.42 2022-01-03 12:43:10 2022-01-05 12:43:10
104360 Clarence_Array CL6 St.19 2019-04-10 19:16:18 2019-04-12 19:16:18
105120 Clarence_Array CL2 St.17 2019-04-11 19:10:51 2019-04-13 19:10:51
107568 IMOS_AIMS_QDAF_FADs FAD 1 (Fraser Island) St.23 2021-11-23 16:29:59 2021-11-25 16:29:59
109620 Clarence_Array CLA1 St.20 2019-04-10 10:52:57 2019-04-13 10:52:57
112179 Kalang-Bellinger_Array Kalang 2 St.26 2020-01-20 20:08:51 2020-01-22 20:08:51
112741 Clarence_Array CLA2 St.21 2019-04-11 16:48:20 2019-04-15 16:48:20
112742 Clarence_Array CL4 St.18 2019-04-10 13:55:32 2019-04-13 13:55:32
113938 Kalang-Bellinger_Array Kalang 3 St.27 2020-01-13 14:15:23 2020-01-23 14:15:23
114688 IMOS-ATF_Heron_Island HER 24 St.24 2020-07-21 01:28:45 2020-07-23 01:28:45
114804 Wolf_Rock_-_Grey_Nurse_Shark_Installation ST09 WR St.40 2020-05-16 03:38:34 2020-06-11 03:38:34
114811 Moreton_Island_-_Grey_Nurse_Shark_Installation Cherubs Cave 2017 St.6 2020-05-17 11:24:31 2020-05-26 11:24:31
115181.dpl.1 Kalang-Bellinger_Array Kalang 2 St.26 2019-03-25 13:28:40 2019-05-04 13:28:40
115181.dpl.2 Kalang-Bellinger_Array Kalang 1 St.25 2020-01-29 11:52:12 2020-06-29 11:52:12
115409 Kalang-Bellinger_Array Kalang 3 St.27 2019-02-19 06:33:02 2019-05-27 06:33:02
115418.dpl.1 Kalang-Bellinger_Array Kalang 4 St.28 2019-05-01 19:06:06 2019-05-03 19:06:06
115418.dpl.2 Kalang-Bellinger_Array Kalang 3 St.27 2020-02-05 13:05:57 2020-05-01 13:05:57
119285 Kalang-Bellinger_Array Kalang 4 St.28 2020-01-20 17:40:54 2020-01-22 17:40:54
121042 Kalang-Bellinger_Array Kalang 1 St.25 2019-11-02 10:40:16 2020-02-01 10:40:16
121365.dpl.1 Kalang-Bellinger_Array Kalang 1 St.25 2019-02-19 05:21:59 2019-07-15 05:21:59
121365.dpl.2 Kalang-Bellinger_Array Kalang 4 St.28 2020-02-05 14:21:42 2020-05-01 14:21:42
122979 Clarence_Array CL1 St.16 2019-04-10 12:47:20 2019-04-14 12:47:20
136067 IMOS_Coastal_Array_Queensland Scott_s Point St.35 2021-12-24 08:47:27 2021-12-26 08:47:27
136069 IMOS_Coastal_Array_Queensland Bundaberg SCP St.4 2021-09-04 05:45:33 2021-10-06 05:45:33
136085 IMOS_Coastal_Array_Queensland Coolangatta SCP St.22 2020-12-07 01:57:17 2021-06-14 01:57:17
136087 IMOS_Coastal_Array_Queensland Peel Island St.32 2021-08-22 10:02:04 2021-12-04 10:02:04
250376 IMOS-ATF_Coffs_Harbour_line CHS 5 St.12 2020-04-21 20:47:49 2020-04-23 20:47:49
250378 IMOS-ATF_Coffs_Harbour_line CHS 10 St.8 2020-04-29 09:13:43 2020-05-05 09:13:43
250380 IMOS-ATF_Coffs_Harbour_line CHS 1 St.7 2021-03-10 21:40:13 2021-04-01 21:40:13
250387 IMOS-ATF_Coffs_Harbour_line CHS 3 St.10 2020-04-17 09:48:40 2020-05-01 09:48:40
250396 IMOS-ATF_Coffs_Harbour_line CHS 9 St.15 2020-04-29 08:46:32 2021-04-26 08:46:32
250400 IMOS-ATF_Coffs_Harbour_line CHS 4 St.11 2021-03-28 19:35:25 2021-03-30 19:35:25
250402 IMOS-ATF_Coffs_Harbour_line CHS 8 St.14 2021-05-02 04:12:48 2021-05-04 04:12:48
250403 IMOS-ATF_Coffs_Harbour_line CHS 7 St.13 2020-05-01 21:10:11 2020-05-03 21:10:11
250584 IMOS-ATF_Coffs_Harbour_line CHS 2 St.9 2020-04-28 21:32:27 2021-04-01 21:32:27
450050 IMOS_Coastal_Array_Queensland AIMS Special Management 1 St.1 2021-06-23 17:57:38 2021-06-25 17:57:38
481315 IMOS_Coastal_Array_Queensland South Trees (Gladstone) St.38 2021-10-20 09:14:57 2022-06-09 09:14:57
484011 IMOS-ATF_One_Tree_Island OT 3 St.29 2021-08-30 02:20:42 2021-09-01 02:20:42
484594 IMOS_Coastal_Array_Queensland Bucasia SCP St.3 2021-06-08 03:23:36 2021-06-10 03:23:36
484596 IMOS_Coastal_Array_Queensland Palm Beach SCP St.31 2021-05-02 16:41:47 2021-06-14 16:41:47
485242 IMOS_Coastal_Array_Queensland Barney Point Wharf (GPC) (Gladstone) St.2 2021-10-13 02:29:36 2021-12-15 02:29:36
546939 Qld_Array_-_Mackay Cape Hilsborough St.5 2021-06-08 13:18:29 2021-06-10 13:18:29
548503 Whitsundays Repulse Bay St.33 2021-06-09 23:42:14 2021-08-08 23:42:14
548534 IMOS-ATF_Stradbroke_Island_Line SI 6 St.37 2021-07-10 02:17:56 2021-07-12 02:17:56
548847 IMOS-ATF_Seal_Rocks_Line SRL1 St.39 2021-04-05 20:32:55 2021-04-07 20:32:55
549819 Whitsundays Shute Harbour St.36 2021-08-02 09:36:00 2021-08-13 09:36:00

Release sites

Station.name Latitude Longitude Array Type Standard.name n.F n.M
-30.45_153.01 -30.45 153.01 Kalang-Bellinger_Array Release -30.45_153.01 1 0
-30.45_153.03 -30.45 153.03 Kalang-Bellinger_Array Release -30.45_153.03 1 0
-30.46_152.99 -30.46 152.99 Kalang-Bellinger_Array Release -30.46_152.99 0 1
-30.49_153.02 -30.49 153.02 Kalang-Bellinger_Array Release -30.49_153.02 1 0
-30.49_153.03 -30.49 153.03 Kalang-Bellinger_Array Release -30.49_153.03 1 0

Warning messages

Warning: Troublesome characters found in the station names (\/:*?"<>'). Replacing these with '_' to prevent function failure.
Warning: Troublesome characters found in the array names (\/:*?"<>'). Replacing these with '_' to prevent function failure.
Warning: Long array names detected. To improve graphic rendering, consider keeping array names under six characters.
Warning: Troublesome characters found in the section names (\/:*?"<>|). Replacing these with '_' to prevent function failure.
Warning: Long section names detected. To improve graphic rendering, consider keeping section names under six characters.
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: 'inactive.warning'/'inactive.error' were not set, skipping inactivity checks.
Warning: Tag A69-9001-14230 (1/5) jumped through 3 arrays in valid events 357 -> 358 (Kalang-Bellinger_Array -> IMOS_Coastal_Array_Queensland).
Warning: Tag A69-9001-18767 (3/5) jumped through 2 arrays in valid events 109 -> 110 (IMOS-ATF_Coffs_Harbour_line -> Wolf_Rock_-_Grey_Nurse_Shark_Installation).
Warning: Tag A69-9001-18784 (4/5) jumped through 2 arrays in valid events 341 -> 342 (Flat_Rock_-_Grey_Nurse_Shark_Installation -> Moreton_Island_-_Grey_Nurse_Shark_Installation).
Warning: Tag A69-9001-18784 (4/5) jumped through 2 arrays in valid events 342 -> 343 (Moreton_Island_-_Grey_Nurse_Shark_Installation -> Wolf_Rock_-_Grey_Nurse_Shark_Installation).
Warning: Tag A69-9001-18784 (4/5) jumped through 3 arrays in valid events 344 -> 345 (Wolf_Rock_-_Grey_Nurse_Shark_Installation -> IMOS_Coastal_Array_Queensland).
Warning: Tag A69-9001-18784 (4/5) jumped through 2 arrays in valid events 348 -> 349 (IMOS_Coastal_Array_Queensland -> Wolf_Rock_-_Grey_Nurse_Shark_Installation).
Warning: Tag A69-9001-18784 (4/5) jumped 2 or more arrays on 5 occasions (of which the first 4 are displayed above).
Warning: Tag A69-9001-18831 (5/5) jumped through 3 arrays in valid events 43 -> 44 (IMOS-ATF_Coffs_Harbour_line -> Wolf_Rock_-_Grey_Nurse_Shark_Installation).

User comments

No comments were included during the analysis.

Biometric graphics

Note:
The data used in this graphic is the data present in the biometrics.csv file.

Average time of arrival at each Array

Note:
Coloured lines on the outer circle indicate the mean value for each group and the respective ranges show the standard error of the mean. Each group’s bars sum to 100%. The number of data points in each group is presented between brackets in the legend of each pannel.
You can replicate these graphics and edit them as needed using the plotTimes() function.
The data used in these graphics is stored in the times object.
/var/folders/73/vsm0y6wj5hx3yb0zg1bqs47w0000gn/T//RtmpFSIdZi/actel_report_auxiliary_files/circular_svg_print_failure_bounce_back.png /var/folders/73/vsm0y6wj5hx3yb0zg1bqs47w0000gn/T//RtmpFSIdZi/actel_report_auxiliary_files/circular_svg_print_failure_bounce_back.png /var/folders/73/vsm0y6wj5hx3yb0zg1bqs47w0000gn/T//RtmpFSIdZi/actel_report_auxiliary_files/circular_svg_print_failure_bounce_back.png /var/folders/73/vsm0y6wj5hx3yb0zg1bqs47w0000gn/T//RtmpFSIdZi/actel_report_auxiliary_files/circular_svg_print_failure_bounce_back.png /var/folders/73/vsm0y6wj5hx3yb0zg1bqs47w0000gn/T//RtmpFSIdZi/actel_report_auxiliary_files/circular_svg_print_failure_bounce_back.png /var/folders/73/vsm0y6wj5hx3yb0zg1bqs47w0000gn/T//RtmpFSIdZi/actel_report_auxiliary_files/circular_svg_print_failure_bounce_back.png /var/folders/73/vsm0y6wj5hx3yb0zg1bqs47w0000gn/T//RtmpFSIdZi/actel_report_auxiliary_files/circular_svg_print_failure_bounce_back.png /var/folders/73/vsm0y6wj5hx3yb0zg1bqs47w0000gn/T//RtmpFSIdZi/actel_report_auxiliary_files/circular_svg_print_failure_bounce_back.png

Individual detection plots

Note:
You can choose to plot detections by station or by array using the detections.y.axis argument.
The detections are coloured by section. The vertical black dashed line shows the release time. The full dark-grey line shows the movement events considered valid, while the dashed dark-grey line shows the movement events considered invalid.
Manually edited tags are highlighted with yellow graphic borders.
The arrays have been aligned by section, following the order provided either in the spatial input or the section.order argument.
You can replicate these graphics and edit them as needed using the plotDetections() function.
You can also see the movement events of multiple tags simultaneously using the plotMoves() function.
The data used in these graphics is stored in the detections and movements objects (and respective valid counterparts).

Full log

Actel R package report.
Version: 1.2.1

Target folder: /Users/yuri/Library/CloudStorage/OneDrive-MacquarieUniversity/ASFB 2022 - RSP workshop/data/Coastal
Timestamp: 2022-10-25 15:06:33
Function: explore()

M: 'report' option has been activated.
M: Importing data. This process may take a while.
M: Number of target tags: 5.
Warning: Troublesome characters found in the station names (\/:*?"<>'). Replacing these with '_' to prevent function failure.
Warning: Troublesome characters found in the array names (\/:*?"<>'). Replacing these with '_' to prevent function failure.
Warning: Long array names detected. To improve graphic rendering, consider keeping array names under six characters.
Warning: Troublesome characters found in the section names (\/:*?"<>|). Replacing these with '_' to prevent function failure.
Warning: Long section names detected. To improve graphic rendering, consider keeping section names under six characters.
M: Matching detections with deployment periods.
M: Number of ALS: 47 (of which 0 had no detections)
M: Data time range: 2019-01-29 23:43:44 to 2022-06-08 17:41:43 (Australia/Sydney).
M: Data successfully imported!
M: Creating movement records for the valid tags.
M: Checking movement events quality.
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: 'inactive.warning'/'inactive.error' were not set, skipping inactivity checks.
Warning: Tag A69-9001-14230 (1/5) jumped through 3 arrays in valid events 357 -> 358 (Kalang-Bellinger_Array -> IMOS_Coastal_Array_Queensland).
Warning: Tag A69-9001-18767 (3/5) jumped through 2 arrays in valid events 109 -> 110 (IMOS-ATF_Coffs_Harbour_line -> Wolf_Rock_-_Grey_Nurse_Shark_Installation).
Warning: Tag A69-9001-18784 (4/5) jumped through 2 arrays in valid events 341 -> 342 (Flat_Rock_-_Grey_Nurse_Shark_Installation -> Moreton_Island_-_Grey_Nurse_Shark_Installation).
Warning: Tag A69-9001-18784 (4/5) jumped through 2 arrays in valid events 342 -> 343 (Moreton_Island_-_Grey_Nurse_Shark_Installation -> Wolf_Rock_-_Grey_Nurse_Shark_Installation).
Warning: Tag A69-9001-18784 (4/5) jumped through 3 arrays in valid events 344 -> 345 (Wolf_Rock_-_Grey_Nurse_Shark_Installation -> IMOS_Coastal_Array_Queensland).
Warning: Tag A69-9001-18784 (4/5) jumped through 2 arrays in valid events 348 -> 349 (IMOS_Coastal_Array_Queensland -> Wolf_Rock_-_Grey_Nurse_Shark_Installation).
Warning: Tag A69-9001-18784 (4/5) jumped 2 or more arrays on 5 occasions (of which the first 4 are displayed above).
         Events that raised warnings: 342:343, 345, 349, 352
Warning: Tag A69-9001-18831 (5/5) jumped through 3 arrays in valid events 43 -> 44 (IMOS-ATF_Coffs_Harbour_line -> Wolf_Rock_-_Grey_Nurse_Shark_Installation).
M: Filtering valid array movements.
M: Compiling circular times.
M: Skipping saving of the results.
M: Producing the report.
M: Drawing individual detection graphics.
M: Process finished successfully.

-------------------
User interventions:
-------------------
n # invalidate/expand moves in A69-9001-14230?
n # invalidate/expand moves in A69-9001-18784?
n # invalidate/expand moves in A69-9001-18831?
n # save results?
-------------------
Function call:
-------------------
explore(tz = 'Australia/Sydney', datapack = NULL, max.interval = 60, minimum.detections = 2, start.time = NULL, stop.time = NULL, speed.method = c('last to first'), speed.warning = NULL, speed.error = NULL, jump.warning = 2, jump.error = 3, inactive.warning = NULL, inactive.error = NULL, exclude.tags = NULL, override = NULL, report = TRUE, discard.orphans = FALSE, discard.first = NULL, auto.open = TRUE, save.detections = FALSE, GUI = 'never', save.tables.locally = 'FALSE, print.releases = TRUE, detections.y.axis = 'auto')
-------------------

Index:

Summary Study area Stations Deployments Release sites Warnings Comments Biometrics Arrival times Individual detections Full log